The talks centred on human resource standards and challenges in the way of the universal health coverage (UHC) mission.
The deal does not fulfil their demands regarding the matter of internship postings for medical graduates.
Kenya is grappling with a significant healthcare crisis as workers continue to strike, demanding better working conditions.
The Kenya Medical Practitioners Pharmacists and Dentists Union (KMPDU) underscored the enduring grievances against the government, which are yet to be resolved.
The healthcare system has long been overburdened and underfunded, but it has ground to a near halt after about 7,000 professionals walked off the job.
Government officials say they are heading to court to seek clearance to have all the medics fired and replaced.
Doctors' representatives decline to attend meeting called by Head of Public Service Felix Koskei.
KMPDU say they follow proper channels to ensure peaceful demonstrations but are met with threats of force and intimidation.
Despite a plea from Head of Public Service Felix Koskei to halt their strike pending government engagement, the doctors remain steadfast in their resolve.
CS says striking doctors have attempted to intimidate and threaten violence against health workers who have opted out of the "unlawful" industrial action.
The doctors have accused the county leadership of lacking goodwill in solving their issues.
Led by party leader Raila Odinga, they accuse the government of responding inadequately to a serious crisis.
The doctors rejected the proposal, asserting that it did not meet the terms outlined in the 2017 Collective Bargaining Agreement (CBA).
The medics condemned recent threats issued by various county governors, management of national referral hospitals and Ministry of Health demanding doctors to return to work under duress.
The governors of the respective counties stressed the significance of prioritising patient care and ensuring continuity of vital medical services.
The clinical officers had issued a seven-day strike notice to the government over grievances that they say have not been addressed.
The doctors were aggrieved by reports of governors using divide-and-rule tactics to intimidate and coerce them from striking.
CoG chair Anne Waiguru noted that a court declared the industrial action illegal, hence the need for the doctors to return to work.
The medics are now calling for a meeting with President William Ruto as they seek a resolution to end the stalemate.
Medics claim the President was being fed wrong information about the nationwide strike.