Communal clashes saw parents withdraw their children from Bisanadi Primary School, and teachers chased away, denying hundreds the right to education.
Some schools resumed operations on Monday, May 13, with learners allowed to return to classes.
A spot check found some schools still flooded and some displaced persons yet to move out of their temporary shelters.
The administration refurbished washrooms that had been in deplorable condition, posing health hazards to students.
The government postponed the opening date to May 13, prompting an abrupt surge in demand for transport.
According to Deputy Government Spokesperson Mwanaisha Chidzuga, some schools were particularly hard-hit by the torrential rains and floods.
"I was here five years ago when tragedy struck after the building collapsed and killed students. I was able to mediate and we got a piece of land from Lenana school where we were able to get land," Ruto said.
Traffic police officers have been deployed to critical highways to monitor traffic violations such as speeding, overloading, and the use of unroadworthy vehicles.
NTSA Road Safety Manager Samuel Musumba said they were collaborating with traffic police nationwide to keep students safe on their journeys back to school.
We have been overly reliant on opposition leader Raila Odinga for far too long. We must fix ourselves, beginning with electing leaders who will not torture us or neglect their responsibilities.
Abdikadir was wary about the psychological preparedness of the victims to be relocated to different camps, which may affect them, especially children.
Schools were to reopen for the second term on April 29 but the government put it off in the wake of heavy rainfall and devastating floods which have so far killed over 257 people.
Several regions in Kenya will continue bracing for more rain.
Machogu assured parents that transportation routes to schools are secure and learning materials lost to floods will be replaced.
President William Ruto pledged to provide Sh10,000 to each of the 40,000 families affected by floods.
Ruto also declared that Friday, May 10, is a public holiday to remember Kenyans adversely affected by climate change.
President William Ruto assured that his government will renovate all damaged schools to facilitate the smooth resumption of studies.
The initial school reopening date had been pushed from Monday, April 29 to Monday, May 6 this year.
CS Ezekiel Machogu directed parents to ensure that their children safely report to school on time.
